IL_6YAL_058

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6YAL|1|2|A|1690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_058 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1942

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6YAL|1|2|G|1199
6YAL|1|2|A|1200
*
6YAL|1|2|U|1689
6YAL|1|2|A|1690
6YAL|1|2|C|1691

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS5

Chain b

40S ribosomal protein eS26