IL_6YAL_079

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCGAG

Length

10 nucleotides

Bulged bases

6YAL|1|2|A|1470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAL|1|2|C|1449
6YAL|1|2|A|1450
6YAL|1|2|A|1451
6YAL|1|2|G|1452
*
6YAL|1|2|C|1466
6YAL|1|2|C|1467
6YAL|1|2|C|1468
6YAL|1|2|G|1469
6YAL|1|2|A|1470
6YAL|1|2|G|1471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S Ribosomal protein uS7

Chain S

40S ribosomal protein uS9

Chain T

40S ribosomal protein eS17

Chain g

ribosomal protein RACK1