IL_6YAL_080
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_080 not in the Motif Atlas
- Geometric match to IL_3GM7_002
- Geometric discrepancy: 0.1069
- The information below is about IL_3GM7_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6YAL|1|2|A|1532
6YAL|1|2|C|1533
6YAL|1|2|U|1534
*
6YAL|1|2|A|1589
6YAL|1|2|U|1590
6YAL|1|2|U|1591
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S Ribosomal protein uS7
- Chain S
- 40S ribosomal protein uS9
- Chain U
- 40S ribosomal protein uS13
- Chain V
- 40S ribosomal protein eS19
- Chain n
- 40S ribosomal protein eS25
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