IL_6YAL_081

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6YAL|1|2|A|1575, 6YAL|1|2|C|1576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAL|1|2|G|1545
6YAL|1|2|U|1546
6YAL|1|2|G|1547
6YAL|1|2|C|1548
6YAL|1|2|C|1549
6YAL|1|2|U|1550
6YAL|1|2|A|1551
6YAL|1|2|C|1552
6YAL|1|2|C|1553
*
6YAL|1|2|G|1572
6YAL|1|2|U|1573
6YAL|1|2|A|1574
6YAL|1|2|A|1575
6YAL|1|2|C|1576
6YAL|1|2|C|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S Ribosomal protein uS3

Chain M

40S ribosomal protein eS10

Chain V

40S ribosomal protein eS19

Chain W

40S ribosomal protein uS10

Chain e

40S ribosomal protein uS14