IL_6YAL_083
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_083 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.1008
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YAL|1|2|G|1599
6YAL|1|2|G|1600
6YAL|1|2|G|1601
6YAL|1|2|A|1602
6YAL|1|2|U|1603
6YAL|1|2|C|1604
6YAL|1|2|G|1605
*
6YAL|1|2|C|1624
6YAL|1|2|A|1625
6YAL|1|2|U|1626
6YAL|1|2|G|1627
6YAL|1|2|A|1628
6YAL|1|2|A|1629
6YAL|1|2|C|1630
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain U
- 40S ribosomal protein uS13
- Chain V
- 40S ribosomal protein eS19
- Chain n
- 40S ribosomal protein eS25
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