3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGGAUCG*CAUGAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_083 not in the Motif Atlas
Homologous match to IL_8C3A_469
Geometric discrepancy: 0.1008
The information below is about IL_8C3A_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10092.1
Basepair signature
cWW-tSH-tSH-L-R-cWW-L-R-cWW
Number of instances in this motif group
1

Unit IDs

6YAL|1|2|G|1599
6YAL|1|2|G|1600
6YAL|1|2|G|1601
6YAL|1|2|A|1602
6YAL|1|2|U|1603
6YAL|1|2|C|1604
6YAL|1|2|G|1605
*
6YAL|1|2|C|1624
6YAL|1|2|A|1625
6YAL|1|2|U|1626
6YAL|1|2|G|1627
6YAL|1|2|A|1628
6YAL|1|2|A|1629
6YAL|1|2|C|1630

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain U
40S ribosomal protein uS13
Chain V
40S ribosomal protein eS19
Chain n
40S ribosomal protein eS25

Coloring options:


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