IL_6YAL_083

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_083 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1008

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6YAL|1|2|G|1599
6YAL|1|2|G|1600
6YAL|1|2|G|1601
6YAL|1|2|A|1602
6YAL|1|2|U|1603
6YAL|1|2|C|1604
6YAL|1|2|G|1605
*
6YAL|1|2|C|1624
6YAL|1|2|A|1625
6YAL|1|2|U|1626
6YAL|1|2|G|1627
6YAL|1|2|A|1628
6YAL|1|2|A|1629
6YAL|1|2|C|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19

Chain n

40S ribosomal protein eS25