IL_6YAM_013

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_013 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.3156

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6YAM|1|2|C|187
6YAM|1|2|U|188
6YAM|1|2|G|189
6YAM|1|2|A|190
6YAM|1|2|C|191
*
6YAM|1|2|G|204
6YAM|1|2|G|205
6YAM|1|2|A|206
6YAM|1|2|U|207
6YAM|1|2|G|208

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein eS8