IL_6YAM_017

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_017 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1883

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6YAM|1|2|C|308
6YAM|1|2|A|309
6YAM|1|2|G|310
*
6YAM|1|2|C|321
6YAM|1|2|G|322
6YAM|1|2|G|323

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein eS6