IL_6YAM_031

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6YAM|1|2|U|597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_031 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.5528

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6YAM|1|2|G|596
6YAM|1|2|U|597
6YAM|1|2|C|598
*
6YAM|1|2|G|625
6YAM|1|2|C|626

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

beta-globin mRNA

Chain F

40S ribosomal protein uS3

Chain i

40S ribosomal protein eS30