IL_6YAM_041

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAM|1|2|G|803
6YAM|1|2|A|804
6YAM|1|2|A|805
6YAM|1|2|A|806
6YAM|1|2|A|807
6YAM|1|2|A|808
6YAM|1|2|A|809
6YAM|1|2|U|810
6YAM|1|2|U|811
6YAM|1|2|A|812
*
6YAM|1|2|U|844
6YAM|1|2|A|845
6YAM|1|2|C|846
6YAM|1|2|C|847
6YAM|1|2|G|848
6YAM|1|2|C|849
6YAM|1|2|A|850
6YAM|1|2|G|851
6YAM|1|2|C|852

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain L

40S ribosomal protein uS4

Chain N

40S ribosomal protein uS17

Chain Y

40S ribosomal protein uS8