IL_6YAM_052

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_052 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0792

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6YAM|1|2|C|1043
6YAM|1|2|G|1044
6YAM|1|2|A|1045
6YAM|1|2|A|1046
6YAM|1|2|G|1047
*
6YAM|1|2|C|1063
6YAM|1|2|G|1064
6YAM|1|2|U|1065
6YAM|1|2|A|1066
6YAM|1|2|G|1067

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein uS11

Chain b

40S ribosomal protein eS26