3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAM_052 not in the Motif Atlas
Geometric match to IL_5J7L_037
Geometric discrepancy: 0.0792
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6YAM|1|2|C|1043
6YAM|1|2|G|1044
6YAM|1|2|A|1045
6YAM|1|2|A|1046
6YAM|1|2|G|1047
*
6YAM|1|2|C|1063
6YAM|1|2|G|1064
6YAM|1|2|U|1065
6YAM|1|2|A|1066
6YAM|1|2|G|1067

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain Q
40S ribosomal protein uS11
Chain b
40S ribosomal protein eS26

Coloring options:


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