IL_6YAM_056

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_056 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2496

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6YAM|1|2|G|1104
6YAM|1|2|C|1105
6YAM|1|2|G|1106
*
6YAM|1|2|C|1119
6YAM|1|2|C|1120

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS2

Chain D

40S ribosomal protein eS1

Chain T

40S ribosomal protein eS17

Chain c

40S ribosomal protein eS27