IL_6YAM_081

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6YAM|1|2|A|1575, 6YAM|1|2|C|1576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAM|1|2|G|1545
6YAM|1|2|U|1546
6YAM|1|2|G|1547
6YAM|1|2|C|1548
6YAM|1|2|C|1549
6YAM|1|2|U|1550
6YAM|1|2|A|1551
6YAM|1|2|C|1552
6YAM|1|2|C|1553
*
6YAM|1|2|G|1572
6YAM|1|2|U|1573
6YAM|1|2|A|1574
6YAM|1|2|A|1575
6YAM|1|2|C|1576
6YAM|1|2|C|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein uS3

Chain M

40S ribosomal protein eS10

Chain V

40S ribosomal protein eS19

Chain W

40S ribosomal protein uS10

Chain e

ribosomal protein uS14