IL_6YAM_083

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_083 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1008

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6YAM|1|2|G|1599
6YAM|1|2|G|1600
6YAM|1|2|G|1601
6YAM|1|2|A|1602
6YAM|1|2|U|1603
6YAM|1|2|C|1604
6YAM|1|2|G|1605
*
6YAM|1|2|C|1624
6YAM|1|2|A|1625
6YAM|1|2|U|1626
6YAM|1|2|G|1627
6YAM|1|2|A|1628
6YAM|1|2|A|1629
6YAM|1|2|C|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19

Chain n

ribosomal protein eS25