IL_6YAM_087

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCUAC*GUAAAAG

Length

13 nucleotides

Bulged bases

6YAM|1|2|A|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAM|1|2|C|1703
6YAM|1|2|G|1704
6YAM|1|2|C|1705
6YAM|1|2|U|1706
6YAM|1|2|A|1707
6YAM|1|2|C|1708
*
6YAM|1|2|G|1814
6YAM|1|2|U|1815
6YAM|1|2|A|1816
6YAM|1|2|A|1817
6YAM|1|2|A|1818
6YAM|1|2|A|1819
6YAM|1|2|G|1820

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

beta-globin mRNA

Chain R

40S ribosomal protein uS19

Chain Z

40S ribosomal protein uS12

Chain j

eukaryotic translation initiation factor 1A

Chain k

ATP-binding cassette sub-family E member 1 (ABCE1)

Chain l

60s ribosomal protein l41