IL_6YAM_089

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_089 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1512

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6YAM|1|2|C|1712
6YAM|1|2|G|1713
6YAM|1|2|A|1714
6YAM|1|2|U|1715
*
6YAM|1|2|A|1807
6YAM|1|2|G|1808
6YAM|1|2|A|1809
6YAM|1|2|G|1810

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein uS12

Chain k

ATP-binding cassette sub-family E member 1 (ABCE1)

Chain l

60s ribosomal protein l41