IL_6YAM_100

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6YAM|1|2|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_100 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2686

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6YAM|1|2|G|921
6YAM|1|2|A|922
*
6YAM|1|2|U|1011
6YAM|1|2|U|1012
6YAM|1|2|U|1013

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

ribosomal protein uS15

Chain c

40S ribosomal protein eS27