IL_6YAM_104

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UACGCG*CCCCCA

Length

12 nucleotides

Bulged bases

6YAM|1|2|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAM|1|2|U|1404
6YAM|1|2|A|1405
6YAM|1|2|C|1406
6YAM|1|2|G|1407
6YAM|1|2|C|1408
6YAM|1|2|G|1409
*
6YAM|1|2|C|1429
6YAM|1|2|C|1430
6YAM|1|2|C|1431
6YAM|1|2|C|1432
6YAM|1|2|C|1433
6YAM|1|2|A|1434

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS9

Chain V

40S ribosomal protein eS19

Chain W

40S ribosomal protein uS10