3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
6YAM|1|2|U|1580, 6YAM|1|2|G|1582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAM|1|2|G|1536
6YAM|1|2|C|1537
6YAM|1|2|U|1538
6YAM|1|2|C|1539
6YAM|1|2|A|1540
6YAM|1|2|G|1541
6YAM|1|2|C|1542
6YAM|1|2|G|1543
6YAM|1|2|U|1544
6YAM|1|2|G|1545
*
6YAM|1|2|C|1577
6YAM|1|2|C|1578
6YAM|1|2|G|1579
6YAM|1|2|U|1580
6YAM|1|2|U|1581
6YAM|1|2|G|1582
6YAM|1|2|A|1583
6YAM|1|2|A|1584
6YAM|1|2|C|1585
6YAM|1|2|C|1586
6YAM|1|2|C|1587

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain F
40S ribosomal protein uS3
Chain H
40S ribosomal protein uS7
Chain S
40S ribosomal protein uS9
Chain V
40S ribosomal protein eS19
Chain W
40S ribosomal protein uS10
Chain e
ribosomal protein uS14
Chain n
ribosomal protein eS25

Coloring options:

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