IL_6YAN_019

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6YAN|1|2|C|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2131

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6YAN|1|2|U|356
6YAN|1|2|U|357
6YAN|1|2|U|358
6YAN|1|2|C|359
6YAN|1|2|G|360
6YAN|1|2|A|361
*
6YAN|1|2|U|383
6YAN|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S8

Chain N

Ribosomal protein S11