IL_6YAN_025

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

AUAC*GUAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_025 not in the Motif Atlas

Geometric match to IL_8CRE_009

Geometric discrepancy: 0.3799

The information below is about IL_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6YAN|1|2|A|519
6YAN|1|2|U|520
6YAN|1|2|A|521
6YAN|1|2|C|522
*
6YAN|1|2|G|542
6YAN|1|2|U|543
6YAN|1|2|A|544
6YAN|1|2|A|545
6YAN|1|2|U|546

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain i

40S ribosomal protein eS30