IL_6YAN_045

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6YAN|1|2|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_045 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.354

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6YAN|1|2|G|920
6YAN|1|2|G|921
6YAN|1|2|A|922
6YAN|1|2|C|923
*
6YAN|1|2|G|1010
6YAN|1|2|U|1011
6YAN|1|2|U|1012
6YAN|1|2|U|1013
6YAN|1|2|U|1014

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain P

ribosomal protein uS15

Chain c

40S ribosomal protein S27