IL_6YAN_054

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_054 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2182

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

6YAN|1|2|U|1097
6YAN|1|2|G|1098
6YAN|1|2|C|1099
*
6YAN|1|2|G|1125
6YAN|1|2|G|1126
6YAN|1|2|G|1127

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

ribosomal protein eS1

Chain P

ribosomal protein uS15

Chain b

40S ribosomal protein eS26

Chain c

40S ribosomal protein S27