IL_6YAN_062

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_062 not in the Motif Atlas

Geometric match to IL_7A0S_022

Geometric discrepancy: 0.3377

The information below is about IL_7A0S_022

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6YAN|1|2|G|1266
6YAN|1|2|C|1267
6YAN|1|2|C|1268
*
6YAN|1|2|G|1506
6YAN|1|2|U|1507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein eS10

Chain R

Ribosomal protein S15

Chain e

ribosomal protein uS14

Chain f

ribosomal protein eS31