IL_6YAN_077

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_077 not in the Motif Atlas

Geometric match to IL_1NTA_001

Geometric discrepancy: 0.3763

The information below is about IL_1NTA_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6YAN|1|2|C|1413
6YAN|1|2|C|1414
6YAN|1|2|C|1415
*
6YAN|1|2|G|1424
6YAN|1|2|G|1425

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

ribosomal protein uS9

Chain V

40S ribosomal protein eS19