IL_6YAN_079

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_079 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.0969

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6YAN|1|2|A|1532
6YAN|1|2|C|1533
6YAN|1|2|U|1534
*
6YAN|1|2|A|1589
6YAN|1|2|U|1590
6YAN|1|2|U|1591

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein S5

Chain S

ribosomal protein uS9

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19

Chain h

ribosomal protein eS25