IL_6YAN_080

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6YAN|1|2|A|1575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAN|1|2|G|1545
6YAN|1|2|U|1546
6YAN|1|2|G|1547
6YAN|1|2|C|1548
6YAN|1|2|C|1549
6YAN|1|2|U|1550
6YAN|1|2|A|1551
6YAN|1|2|C|1552
6YAN|1|2|C|1553
*
6YAN|1|2|G|1572
6YAN|1|2|U|1573
6YAN|1|2|A|1574
6YAN|1|2|A|1575
6YAN|1|2|C|1576
6YAN|1|2|C|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain M

40S ribosomal protein eS10

Chain W

Ribosomal_S10 domain-containing protein

Chain e

ribosomal protein uS14