IL_6YAN_089

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

6YAN|1|2|U|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_089 not in the Motif Atlas

Geometric match to IL_4V9F_039

Geometric discrepancy: 0.3892

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6YAN|1|2|U|1715
6YAN|1|2|U|1716
6YAN|1|2|G|1717
*
6YAN|1|2|U|1806
6YAN|1|2|A|1807

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein uS12