3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
UACGCG*CCCCCA
Length
12 nucleotides
Bulged bases
6YAN|1|2|C|1433
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAN|1|2|U|1404
6YAN|1|2|A|1405
6YAN|1|2|C|1406
6YAN|1|2|G|1407
6YAN|1|2|C|1408
6YAN|1|2|G|1409
*
6YAN|1|2|C|1429
6YAN|1|2|C|1430
6YAN|1|2|C|1431
6YAN|1|2|C|1432
6YAN|1|2|C|1433
6YAN|1|2|A|1434

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain S
ribosomal protein uS9
Chain V
40S ribosomal protein eS19
Chain W
Ribosomal_S10 domain-containing protein

Coloring options:

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