3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
6YAN|1|2|U|1580, 6YAN|1|2|G|1582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAN|1|2|G|1536
6YAN|1|2|C|1537
6YAN|1|2|U|1538
6YAN|1|2|C|1539
6YAN|1|2|A|1540
6YAN|1|2|G|1541
6YAN|1|2|C|1542
6YAN|1|2|G|1543
6YAN|1|2|U|1544
6YAN|1|2|G|1545
*
6YAN|1|2|C|1577
6YAN|1|2|C|1578
6YAN|1|2|G|1579
6YAN|1|2|U|1580
6YAN|1|2|U|1581
6YAN|1|2|G|1582
6YAN|1|2|A|1583
6YAN|1|2|A|1584
6YAN|1|2|C|1585
6YAN|1|2|C|1586
6YAN|1|2|C|1587

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain F
Ribosomal protein S3
Chain H
Ribosomal protein S5
Chain S
ribosomal protein uS9
Chain V
40S ribosomal protein eS19
Chain W
Ribosomal_S10 domain-containing protein
Chain e
ribosomal protein uS14
Chain h
ribosomal protein eS25

Coloring options:

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