IL_6YBW_013

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUACUU*AUGCCGAC

Length

15 nucleotides

Bulged bases

6YBW|1|A|C|139, 6YBW|1|A|C|142, 6YBW|1|A|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|G|130
6YBW|1|A|C|139
6YBW|1|A|U|140
6YBW|1|A|A|141
6YBW|1|A|C|142
6YBW|1|A|U|143
6YBW|1|A|U|144
*
6YBW|1|A|A|175
6YBW|1|A|U|176
6YBW|1|A|G|177
6YBW|1|A|C|178
6YBW|1|A|C|179
6YBW|1|A|G|180
6YBW|1|A|A|181
6YBW|1|A|C|182

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6