IL_6YBW_014

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAUAAC*GCUAAUA(OMC)A

Length

17 nucleotides

Bulged bases

6YBW|1|A|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|U|144
6YBW|1|A|G|145
6YBW|1|A|G|146
6YBW|1|A|A|147
6YBW|1|A|U|148
6YBW|1|A|A|149
6YBW|1|A|A|150
6YBW|1|A|C|151
*
6YBW|1|A|G|167
6YBW|1|A|C|168
6YBW|1|A|U|169
6YBW|1|A|A|170
6YBW|1|A|A|171
6YBW|1|A|U|172
6YBW|1|A|A|173
6YBW|1|A|OMC|174
6YBW|1|A|A|175

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain T

40S ribosomal protein S24