IL_6YBW_016

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YBW_016 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2023

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6YBW|1|A|C|188
6YBW|1|A|U|189
6YBW|1|A|G|190
6YBW|1|A|A|191
6YBW|1|A|C|192
*
6YBW|1|A|G|207
6YBW|1|A|G|208
6YBW|1|A|A|209
6YBW|1|A|U|210
6YBW|1|A|G|211

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8