IL_6YBW_020

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YBW_020 not in the Motif Atlas

Geometric match to IL_9PN5_136

Geometric discrepancy: 0.3781

The information below is about IL_9PN5_136

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

6YBW|1|A|C|317
6YBW|1|A|A|318
6YBW|1|A|C|319
*
6YBW|1|A|G|332
6YBW|1|A|G|333

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6