IL_6YBW_029

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUACAG*CCUGUAAUUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|C|527
6YBW|1|A|A|528
6YBW|1|A|A|529
6YBW|1|A|U|530
6YBW|1|A|A|531
6YBW|1|A|C|532
6YBW|1|A|A|533
6YBW|1|A|G|534
*
6YBW|1|A|C|549
6YBW|1|A|C|550
6YBW|1|A|U|551
6YBW|1|A|G|552
6YBW|1|A|U|553
6YBW|1|A|A|554
6YBW|1|A|A|555
6YBW|1|A|U|556
6YBW|1|A|U|557
6YBW|1|A|G|558

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain F

40S ribosomal protein S30