IL_6YBW_055
3D structure
- PDB id
- 6YBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - 40S body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YBW_055 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.1634
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6YBW|1|A|U|1101
6YBW|1|A|G|1102
6YBW|1|A|C|1103
*
6YBW|1|A|G|1129
6YBW|1|A|G|1130
6YBW|1|A|G|1131
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain M
- 40S ribosomal protein S17
- Chain O
- 40S ribosomal protein S3a
- Chain Q
- 40S ribosomal protein S26
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