IL_6YBW_061

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6YBW|1|A|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|C|1708
6YBW|1|A|G|1709
6YBW|1|A|C|1710
6YBW|1|A|U|1711
*
6YBW|1|A|A|1822
6YBW|1|A|A|1823
6YBW|1|A|A|1824
6YBW|1|A|A|1825
6YBW|1|A|G|1826

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain 9

60S ribosomal protein L41

Chain E

40S ribosomal protein S23

Chain p

Eukaryotic translation initiation factor 1

Chain q

Eukaryotic translation initiation factor 1A, X-chromosomal