IL_6YBW_065

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YBW_065 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.1912

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6YBW|1|A|U|1729
6YBW|1|A|U|1730
6YBW|1|A|A|1731
*
6YBW|1|A|U|1803
6YBW|1|A|U|1804
6YBW|1|A|G|1805

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8

Chain y

Eukaryotic translation initiation factor 3 subunit C