IL_6YBW_075

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

6YBW|1|A|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YBW_075 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1282

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6YBW|1|A|G|665
6YBW|1|A|U|666
6YBW|1|A|U|667
6YBW|1|A|A2M|668
6YBW|1|A|A|669
6YBW|1|A|A|670
6YBW|1|A|A|671
*
6YBW|1|A|U|1161
6YBW|1|A|C|1162

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S23

Chain Q

40S ribosomal protein S26