IL_6YDW_022

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_022 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.1934

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6YDW|1|AA|A|419
6YDW|1|AA|A|420
6YDW|1|AA|A|421
6YDW|1|AA|C|422
6YDW|1|AA|U|423
*
6YDW|1|AA|A|439
6YDW|1|AA|C|440
6YDW|1|AA|U|441
6YDW|1|AA|A|442
6YDW|1|AA|U|443

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

uS11m

Chain AU

bS21m

Chain BA

Large subunit ribosomal RNA; LSU rRNA