IL_6YDW_030
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CG*UCAAG
- Length
- 7 nucleotides
- Bulged bases
- 6YDW|1|AA|C|685, 6YDW|1|AA|A|686
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_030 not in the Motif Atlas
- Geometric match to IL_3RW6_003
- Geometric discrepancy: 0.171
- The information below is about IL_3RW6_003
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- Minor groove platform
- Motif group
- IL_24264.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YDW|1|AA|C|617
6YDW|1|AA|G|618
*
6YDW|1|AA|U|684
6YDW|1|AA|C|685
6YDW|1|AA|A|686
6YDW|1|AA|A|687
6YDW|1|AA|G|688
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
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