IL_6YDW_033
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCAAA*UAAGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_033 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2831
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6YDW|1|AA|G|628
6YDW|1|AA|C|629
6YDW|1|AA|A|630
6YDW|1|AA|A|631
6YDW|1|AA|A|632
*
6YDW|1|AA|U|652
6YDW|1|AA|A|653
6YDW|1|AA|A|654
6YDW|1|AA|G|655
6YDW|1|AA|C|656
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AB
- Mitochondrial ribosomal protein S2
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AI
- Uncharacterized protein
- Chain Ak
- Mitochondrial ribosomal protein S35
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