IL_6YDW_039

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACCC*GACAAG

Length

11 nucleotides

Bulged bases

6YDW|1|AA|A|918, 6YDW|1|AA|A|919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDW|1|AA|C|851
6YDW|1|AA|A|852
6YDW|1|AA|C|853
6YDW|1|AA|C|854
6YDW|1|AA|C|855
*
6YDW|1|AA|G|915
6YDW|1|AA|A|916
6YDW|1|AA|C|917
6YDW|1|AA|A|918
6YDW|1|AA|A|919
6YDW|1|AA|G|920

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AX

mRNA

Chain An

Aurora kinase A interacting protein 1

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

Elongation factor G, mitochondrial