IL_6YDW_045

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_045 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.3624

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6YDW|1|AY|A|4
6YDW|1|AY|A|5
6YDW|1|AY|G|6
*
6YDW|1|AY|C|62
6YDW|1|AY|G|63
6YDW|1|AY|U|64

Current chains

Chain AY

tRNAMet

Nearby chains

Chain B6

Uncharacterized protein