IL_6YDW_048
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CU*ACG
- Length
- 5 nucleotides
- Bulged bases
- 6YDW|1|BA|C|104
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_048 not in the Motif Atlas
- Geometric match to IL_3W3S_001
- Geometric discrepancy: 0.3935
- The information below is about IL_3W3S_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 61
Unit IDs
6YDW|1|BA|C|12
6YDW|1|BA|U|13
*
6YDW|1|BA|A|103
6YDW|1|BA|C|104
6YDW|1|BA|G|105
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B2
- Mitochondrial ribosomal protein L47
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain Bh
- Uncharacterized protein
- Chain Bn
- Mitochondrial ribosomal protein L51
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