IL_6YDW_051

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_051 not in the Motif Atlas

Geometric match to IL_3SZX_001

Geometric discrepancy: 0.1776

The information below is about IL_3SZX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6YDW|1|BA|C|181
6YDW|1|BA|C|182
6YDW|1|BA|U|183
*
6YDW|1|BA|A|192
6YDW|1|BA|U|193
6YDW|1|BA|G|194

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

Uncharacterized protein

Chain BP

Uncharacterized protein

Chain BU

Mitochondrial ribosomal protein L20

Chain BV

Mitochondrial ribosomal protein L21