IL_6YDW_057

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_057 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1203

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6YDW|1|BA|C|259
6YDW|1|BA|C|260
6YDW|1|BA|A|261
*
6YDW|1|BA|U|316
6YDW|1|BA|A|317
6YDW|1|BA|G|318

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BD

Uncharacterized protein

Chain Be

Mitochondrial ribosomal protein L41