IL_6YDW_058

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6YDW|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_058 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1449

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6YDW|1|BA|G|265
6YDW|1|BA|C|266
*
6YDW|1|BA|G|310
6YDW|1|BA|A|311
6YDW|1|BA|C|312

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

Uncharacterized protein