IL_6YDW_061
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CCCCAAA*UCCAAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_061 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.3759
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YDW|1|BA|C|394
6YDW|1|BA|C|395
6YDW|1|BA|C|396
6YDW|1|BA|C|397
6YDW|1|BA|A|398
6YDW|1|BA|A|399
6YDW|1|BA|A|400
*
6YDW|1|BA|U|411
6YDW|1|BA|C|412
6YDW|1|BA|C|413
6YDW|1|BA|A|414
6YDW|1|BA|A|415
6YDW|1|BA|U|416
6YDW|1|BA|G|417
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B3
- Uncharacterized protein
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bk
- 39S ribosomal protein L48, mitochondrial
- Chain Bo
- Uncharacterized protein
- Chain Bt
- Mitochondrial ribosomal protein L57
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