IL_6YDW_062

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6YDW|1|BA|A|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_062 not in the Motif Atlas

Geometric match to IL_1NBS_005

Geometric discrepancy: 0.299

The information below is about IL_1NBS_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6YDW|1|BA|G|478
6YDW|1|BA|A|479
6YDW|1|BA|G|480
*
6YDW|1|BA|C|588
6YDW|1|BA|C|589

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B3

Uncharacterized protein

Chain BU

Mitochondrial ribosomal protein L20

Chain BV

Mitochondrial ribosomal protein L21

Chain BW

Uncharacterized protein

Chain Bg

Mitochondrial ribosomal protein L43

Chain Bo

Uncharacterized protein