IL_6YDW_063

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_063 not in the Motif Atlas

Geometric match to IL_2W2H_002

Geometric discrepancy: 0.3011

The information below is about IL_2W2H_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_19557.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6YDW|1|BA|U|502
6YDW|1|BA|A|503
6YDW|1|BA|G|504
*
6YDW|1|BA|C|524
6YDW|1|BA|A|525
6YDW|1|BA|A|526

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L10

Chain BK

Mitochondrial ribosomal protein L11

Chain Bq

Uncharacterized protein